| Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 971 | 2016 |
| Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome SM Varnum, DN Streblow, ME Monroe, P Smith, KJ Auberry, ... Journal of virology 78 (20), 10960-10966, 2004 | 848 | 2004 |
| Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 637 | 2019 |
| Reversed‐phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells Y Wang, F Yang, MA Gritsenko, Y Wang, T Clauss, T Liu, Y Shen, ... Proteomics 11 (10), 2019-2026, 2011 | 621 | 2011 |
| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 545 | 2020 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 521 | 2019 |
| Human Plasma N-Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry T Liu, WJ Qian, MA Gritsenko, DG Camp, ME Monroe, RJ Moore, ... Journal of proteome research 4 (6), 2070-2080, 2005 | 500 | 2005 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 473 | 2021 |
| Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ... Nature protocols 13 (7), 1632-1661, 2018 | 441 | 2018 |
| Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome WJ Qian, T Liu, ME Monroe, EF Strittmatter, JM Jacobs, LJ Kangas, ... Journal of proteome research 4 (1), 53-62, 2005 | 390 | 2005 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 372 | 2020 |
| Advances in proteomics data analysis and display using an accurate mass and time tag approach JSD Zimmer, ME Monroe, WJ Qian, RD Smith Mass spectrometry reviews 25 (3), 450-482, 2006 | 372 | 2006 |
| Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets JF Alfaro, CX Gong, ME Monroe, JT Aldrich, TRW Clauss, SO Purvine, ... Proceedings of the National Academy of Sciences 109 (19), 7280-7285, 2012 | 333 | 2012 |
| Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry JE Kyle, X Zhang, KK Weitz, ME Monroe, YM Ibrahim, RJ Moore, J Cha, ... Analyst 141 (5), 1649-1659, 2016 | 258 | 2016 |
| Integrative analysis of the mitochondrial proteome in yeast H Prokisch, C Scharfe, DG Camp, W Xiao, L David, C Andreoli, ... PLoS Biology 2 (6), e160, 2004 | 252 | 2004 |
| Integrated proteogenomic characterization across major histological types of pediatric brain cancer F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ... Cell 183 (7), 1962-1985. e31, 2020 | 245 | 2020 |
| VIPER: an advanced software package to support high-throughput LC-MS peptide identification ME Monroe, N Tolić, N Jaitly, JL Shaw, JN Adkins, RD Smith Bioinformatics 23 (15), 2021-2023, 2007 | 230 | 2007 |
| MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape VD Menachery, A Schäfer, KE Burnum-Johnson, HD Mitchell, AJ Eisfeld, ... Proceedings of the National Academy of Sciences 115 (5), E1012-E1021, 2018 | 216 | 2018 |
| Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information K Petritis, LJ Kangas, B Yan, ME Monroe, EF Strittmatter, WJ Qian, ... Analytical chemistry 78 (14), 5026-5039, 2006 | 215 | 2006 |
| Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach WJ Qian, ME Monroe, T Liu, JM Jacobs, GA Anderson, Y Shen, RJ Moore, ... Molecular & Cellular Proteomics 4 (5), 700-709, 2005 | 197 | 2005 |
Richard D SmithChief Scientist and Battelle Fellow, Biological Sciences Division, PNNL; retired 2/2024Verified email at pnnl.gov
