Daniel Koenig
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Whole-genome sequencing of multiple Arabidopsis thaliana populations
J Cao, K Schneeberger, S Ossowski, T Günther, S Bender, J Fitz, ...
Nature genetics 43 (10), 956-963, 2011
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
C Becker, J Hagmann, J Müller, D Koenig, O Stegle, K Borgwardt, ...
Nature 480 (7376), 245-249, 2011
The genome of the stress-tolerant wild tomato species Solanum pennellii
A Bolger, F Scossa, ME Bolger, C Lanz, F Maumus, T Tohge, ...
Nature genetics 46 (9), 1034-1038, 2014
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
T Slotte, KM Hazzouri, JA Ĺgren, D Koenig, F Maumus, YL Guo, K Steige, ...
Nature genetics 45 (7), 831-835, 2013
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
D Koenig, JM Jiménez-Gómez, S Kimura, D Fulop, DH Chitwood, ...
Proceedings of the National Academy of Sciences 110 (28), E2655-E2662, 2013
WOX4 promotes procambial development
J Ji, J Strable, R Shimizu, D Koenig, N Sinha, MJ Scanlon
Plant physiology 152 (3), 1346-1356, 2010
Plant secondary siRNA production determined by microRNA-duplex structure
PA Manavella, D Koenig, D Weigel
Proceedings of the National Academy of Sciences 109 (7), 2461-2466, 2012
Auxin patterns Solanum lycopersicum leaf morphogenesis
D Koenig, E Bayer, J Kang, C Kuhlemeier, N Sinha
Development 136 (17), 2997-3006, 2009
Natural variation in leaf morphology results from mutation of a novel KNOX gene
S Kimura, D Koenig, J Kang, FY Yoong, N Sinha
Current Biology 18 (9), 672-677, 2008
Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization
DK Seymour, D Koenig, J Hagmann, C Becker, D Weigel
PLoS genetics 10 (11), e1004785, 2014
Interspecific RNA Interference of SHOOT MERISTEMLESS-Like Disrupts Cuscuta pentagona Plant Parasitism
A Alakonya, R Kumar, D Koenig, S Kimura, B Townsley, S Runo, ...
The Plant Cell 24 (7), 3153-3166, 2012
Beyond the thale: comparative genomics and genetics of Arabidopsis relatives
D Koenig, D Weigel
Nature Reviews Genetics 16 (5), 285-298, 2015
Improving the annotation of Arabidopsis lyrata using RNA-Seq data
V Rawat, A Abdelsamad, B Pietzenuk, DK Seymour, D Koenig, D Weigel, ...
PloS one 10 (9), e0137391, 2015
Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716
M Sharlach, D Dahlbeck, L Liu, J Chiu, JM Jiménez-Gómez, S Kimura, ...
Theoretical and Applied Genetics 126, 601-609, 2013
Long-term balancing selection drives evolution of immunity genes in Capsella
D Koenig, J Hagmann, R Li, F Bemm, T Slotte, B Neuffer, SI Wright, ...
Elife 8, e43606, 2019
Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning
DH Chitwood, LR Headland, A Ranjan, CC Martinez, SA Braybrook, ...
The Plant Cell 24 (6), 2318-2327, 2012
Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids
DK Seymour, E Chae, DG Grimm, C Martín Pizarro, A Habring-Müller, ...
Proceedings of the National Academy of Sciences 113 (46), E7317-E7326, 2016
Mating system shifts and transposable element evolution in the plant genus Capsella
JA Ĺgren, W Wang, D Koenig, B Neuffer, D Weigel, SI Wright
BMC genomics 15, 1-9, 2014
Tissue-Specific Silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a
PA Manavella, D Koenig, I Rubio-Somoza, HA Burbano, C Becker, ...
Plant physiology 161 (2), 805-812, 2013
Coordination of leaf development via regulation of KNOX1 genes
N Uchida, S Kimura, D Koenig, N Sinha
Journal of plant research 123, 7-14, 2010
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