| The PI3K/AKT/mTOR interactive pathway T Ersahin, N Tuncbag, R Cetin-Atalay Molecular BioSystems 11 (7), 1946-1954, 2015 | 567 | 2015 |
| Predicting protein–protein interactions from the molecular to the proteome level O Keskin, N Tuncbag, A Gursoy Chemical reviews 116 (8), 4884-4909, 2016 | 359 | 2016 |
| Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM N Tuncbag, A Gursoy, R Nussinov, O Keskin Nature protocols 6 (9), 1341-1354, 2011 | 319 | 2011 |
| Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy N Tuncbag, A Gursoy, O Keskin Bioinformatics 25 (12), 1513-1520, 2009 | 307 | 2009 |
| HotPoint: hot spot prediction server for protein interfaces N Tuncbag, O Keskin, A Gursoy Nucleic acids research 38 (suppl_2), W402-W406, 2010 | 235 | 2010 |
| A survey of available tools and web servers for analysis of protein–protein interactions and interfaces N Tuncbag, G Kar, O Keskin, A Gursoy, R Nussinov Briefings in bioinformatics 10 (3), 217-232, 2009 | 206 | 2009 |
| Network-based interpretation of diverse high-throughput datasets through the omics integrator software package N Tuncbag, SJC Gosline, A Kedaigle, AR Soltis, A Gitter, E Fraenkel PLoS computational biology 12 (4), e1004879, 2016 | 166 | 2016 |
| HotSprint: database of computational hot spots in protein interfaces E Guney, N Tuncbag, O Keskin, A Gursoy Nucleic acids research 36 (suppl_1), D662-D666, 2007 | 144 | 2007 |
| Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem N Tuncbag, A Braunstein, A Pagnani, SSC Huang, J Chayes, C Borgs, ... Journal of computational biology 20 (2), 124-136, 2013 | 133 | 2013 |
| Architectures and functional coverage of protein–protein interfaces N Tuncbag, A Gursoy, E Guney, R Nussinov, O Keskin Journal of molecular biology 381 (3), 785-802, 2008 | 130 | 2008 |
| Genome-scale networks link neurodegenerative disease genes to α-synuclein through specific molecular pathways V Khurana, J Peng, CY Chung, PK Auluck, S Fanning, DF Tardiff, ... Cell systems 4 (2), 157-170. e14, 2017 | 129 | 2017 |
| Towards inferring time dimensionality in protein–protein interaction networks by integrating structures: the p53 example N Tuncbag, G Kar, A Gursoy, O Keskin, R Nussinov Molecular Biosystems 5 (12), 1770-1778, 2009 | 95 | 2009 |
| SteinerNet: a web server for integrating ‘omic’data to discover hidden components of response pathways N Tuncbag, S McCallum, SC Huang, E Fraenkel Nucleic acids research 40 (W1), W505-W509, 2012 | 89 | 2012 |
| Prediction of protein–protein interactions: unifying evolution and structure at protein interfaces N Tuncbag, A Gursoy, O Keskin Physical biology 8 (3), 035006, 2011 | 73 | 2011 |
| Fast and accurate modeling of protein–protein interactions by combining template‐interface‐based docking with flexible refinement N Tuncbag, O Keskin, R Nussinov, A Gursoy Proteins: Structure, Function, and Bioinformatics 80 (4), 1239-1249, 2012 | 57 | 2012 |
| Characterization and prediction of protein interfaces to infer protein-protein interaction networks O Keskin, N Tuncbag, A Gursoy Current pharmaceutical biotechnology 9 (2), 67-76, 2008 | 52 | 2008 |
| Analysis and network representation of hotspots in protein interfaces using minimum cut trees N Tuncbag, FS Salman, O Keskin, A Gursoy Proteins: Structure, Function, and Bioinformatics 78 (10), 2283-2294, 2010 | 43 | 2010 |
| Functional constraints on replacing an essential gene with its ancient and modern homologs B Kacar, E Garmendia, N Tuncbag, DI Andersson, D Hughes MBio 8 (4), 10.1128/mbio. 01276-17, 2017 | 39 | 2017 |
| Network modeling identifies patient-specific pathways in glioblastoma N Tuncbag, P Milani, JL Pokorny, H Johnson, TT Sio, S Dalin, ... Scientific reports 6 (1), 28668, 2016 | 37 | 2016 |
| Systems-level Analysis Reveals Multiple Modulators of Epithelial-mesenchymal Transition and Identifies DNAJB4 and CD81 as Novel Metastasis Inducers in Breast Cancer*[S] ZCU Kagiali, E Sanal, Ö Karayel, AN Polat, Ö Saatci, PG Ersan, K Trappe, ... Molecular & Cellular Proteomics 18 (9), 1756-1771, 2019 | 36 | 2019 |
