Hamid Mohamadi
Hamid Mohamadi
Amazon Web Services
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Cited by
Cited by
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ...
The Plant Journal 83 (2), 189-212, 2015
Design and analysis of genetic fuzzy systems for intrusion detection in computer networks
MS Abadeh, H Mohamadi, J Habibi
Expert Systems with Applications 38 (6), 7067-7075, 2011
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
Tigmint: correcting assembly errors using linked reads from large molecules
SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ...
BMC bioinformatics 19 (1), 1-10, 2018
Data mining with a simulated annealing based fuzzy classification system
H Mohamadi, J Habibi, MS Abadeh, H Saadi
Pattern Recognition 41 (5), 1824-1833, 2008
ntCard: a streaming algorithm for cardinality estimation in genomics data
H Mohamadi, H Khan, I Birol
Bioinformatics 33 (9), 1324-1330, 2017
ntEdit: scalable genome sequence polishing
RL Warren, L Coombe, H Mohamadi, J Zhang, B Jaquish, N Isabel, ...
Bioinformatics, 565374, 2019
ntHash: recursive nucleotide hashing
H Mohamadi, J Chu, BP Vandervalk, I Birol
Bioinformatics 32 (22), 3492-3494, 2016
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
J Chu, H Mohamadi, RL Warren, C Yang, I Birol
Bioinformatics 33 (8), 1261-1270, 2016
Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation
SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ...
Genome Biology and Evolution 8 (1), 29-41, 2016
RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol
Genome research 30 (8), 1191-1200, 2020
Konnector v2. 0: pseudo-long reads from paired-end sequencing data
BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ...
BMC Medical Genomics 8 (3), 1-10, 2015
BOND: basic oligonucleotide design
L Ilie, H Mohamadi, GB Golding, W F Smyth
BMC bioinformatics 14 (1), 1-8, 2013
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ...
2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014
DIDA: Distributed Indexing Dispatched Alignment
H Mohamadi, BP Vandervalk, A Raymond, SD Jackman, J Chu, ...
PloS one 10 (4), e0126409, 2015
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters
J Chu, H Mohamadi, E Erhan, J Tse, R Chiu, S Yeo, I Birol
Proceedings of the National Academy of Sciences 117 (29), 16961-16968, 2020
Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes
KK Gagalova, RL Warren, L Coombe, J Wong, KM Nip, MMS Yuen, ...
The Plant Journal 111 (5), 1469-1485, 2022
ntHash2: recursive spaced seed hashing for nucleotide sequences
P Kazemi, J Wong, V Nikolić, H Mohamadi, RL Warren, I Birol
Bioinformatics 38 (20), 4812-4813, 2022
Spaced seed data structures for de novo assembly
I Birol, J Chu, H Mohamadi, SD Jackman, K Raghavan, BP Vandervalk, ...
International journal of genomics 2015, 2015
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