Widespread macromolecular interaction perturbations in human genetic disorders N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ... Cell 161 (3), 647-660, 2015 | 563 | 2015 |
Using networks to measure similarity between genes: association index selection JIF Bass, A Diallo, J Nelson, JM Soto, CL Myers, AJM Walhout Nature methods 10 (12), 1169-1176, 2013 | 231 | 2013 |
Extracellular DNA: a major proinflammatory component of Pseudomonas aeruginosa biofilms JI Fuxman Bass, DM Russo, ML Gabelloni, JR Geffner, M Giordano, ... the Journal of Immunology 184 (11), 6386-6395, 2010 | 163 | 2010 |
Human gene-centered transcription factor networks for enhancers and disease variants JIF Bass, N Sahni, S Shrestha, A Garcia-Gonzalez, A Mori, N Bhat, S Yi, ... Cell 161 (3), 661-673, 2015 | 122 | 2015 |
Complex expression dynamics and robustness in C. elegans insulin networks AD Ritter, Y Shen, JF Bass, S Jeyaraj, B Deplancke, A Mukhopadhyay, ... Genome research 23 (6), 954-965, 2013 | 106 | 2013 |
Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities K Narasimhan, SA Lambert, AWH Yang, J Riddell, S Mnaimneh, H Zheng, ... Elife 4, e06967, 2015 | 94 | 2015 |
Neutrophil signaling pathways activated by bacterial DNA stimulation ME Alvarez, JIF Bass, JR Geffner, PXF Calotti, M Costas, OA Coso, ... The Journal of Immunology 177 (6), 4037-4046, 2006 | 74 | 2006 |
NADPH oxidase derived reactive oxygen species are involved in human neutrophil IL‐1β secretion but not in inflammasome activation ML Gabelloni, F Sabbione, C Jancic, JF Bass, I Keitelman, L Iula, ... European journal of immunology 43 (12), 3324-3335, 2013 | 71 | 2013 |
A gene‐centered C. elegans protein–DNA interaction network provides a framework for functional predictions JI Fuxman Bass, C Pons, L Kozlowski, JS Reece‐Hoyes, S Shrestha, ... Molecular systems biology 12 (10), 884, 2016 | 65 | 2016 |
Compendium of human transcription factor effector domains LF Soto, Z Li, CS Santoso, A Berenson, I Ho, VX Shen, S Yuan, JIF Bass Molecular cell 82 (3), 514-526, 2022 | 58 | 2022 |
Global landscape of mouse and human cytokine transcriptional regulation S Carrasco Pro, A Dafonte Imedio, CS Santoso, KA Gan, JA Sewell, ... Nucleic Acids Research 46 (18), 9321-9337, 2018 | 52 | 2018 |
Human virus transcriptional regulators X Liu, T Hong, S Parameswaran, K Ernst, I Marazzi, MT Weirauch, ... Cell 182 (1), 24-37, 2020 | 51 | 2020 |
Flagellin delays spontaneous human neutrophil apoptosis GV Salamone, Y Petracca, JIF Bass, M Rumbo, KA Nahmod, ... Laboratory investigation 90 (7), 1049-1059, 2010 | 46 | 2010 |
Identification of single nucleotide non-coding driver mutations in cancer KA Gan, S Carrasco Pro, JA Sewell, JI Fuxman Bass Frontiers in genetics 9, 16, 2018 | 37 | 2018 |
Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters JI Fuxman Bass, AM Tamburino, A Mori, N Beittel, MT Weirauch, ... Nucleic acids research 42 (1), 153-162, 2014 | 26 | 2014 |
Characterization of bacterial DNA binding to human neutrophil surface JIF Bass, ML Gabelloni, ME Alvarez, ME Vermeulen, DM Russo, ... Laboratory investigation 88 (9), 926-937, 2008 | 25 | 2008 |
Comprehensive mapping of the human cytokine gene regulatory network CS Santoso, Z Li, S Lal, S Yuan, KA Gan, LM Agosto, X Liu, SC Pro, ... Nucleic acids research 48 (21), 12055-12073, 2020 | 24 | 2020 |
Colony lift colorimetric assay for β-galactosidase activity JIF Bass, JS Reece-Hoyes, AJM Walhout Cold Spring Harbor Protocols 2016 (12), pdb. prot088963, 2016 | 23 | 2016 |
Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences M Eslami Rasekh, Y Hernández, SD Drinan, JI Fuxman Bass, G Benson Nucleic acids research 49 (8), 4308-4324, 2021 | 22 | 2021 |
Generating bait strains for yeast one-hybrid assays JIF Bass, JS Reece-Hoyes, AJM Walhout Cold Spring Harbor Protocols 2016 (12), pdb. prot088948, 2016 | 20 | 2016 |