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Richard André Cunha
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Year
RNA structural dynamics as captured by molecular simulations: a comprehensive overview
J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ...
Chemical reviews 118 (8), 4177-4338, 2018
4112018
Unraveling Mg2+–RNA binding with atomistic molecular dynamics
RA Cunha, G Bussi
RNA 23 (5), 628-638, 2017
582017
The molecular structure and conformational dynamics of chitosan polymers: an integrated perspective from experiments and computational simulations
RA Cunha, TA Soares, VH Rusu, FJS Pontes, EF Franca, RD Lins
The complex world of polysaccharides 1, 2012
502012
Designing an enzyme-based nanobiosensor using molecular modeling techniques
EF Franca, FL Leite, RA Cunha, ON Oliveira Jr, LCG Freitas
Physical Chemistry Chemical Physics 13 (19), 8894-8899, 2011
352011
Modeling the coverage of an AFM tip by enzymes and its application in nanobiosensors
AM Amarante, GS Oliveira, CC Bueno, RA Cunha, JCM Ierich, ...
Journal of Molecular Graphics and Modelling 53, 100-104, 2014
302014
Zooming in on the O–O Bond Formation—An Ab Initio Molecular Dynamics Study Applying Enhanced Sampling Techniques
M Schilling, RA Cunha, S Luber
Journal of chemical theory and computation 16 (4), 2436-2449, 2020
272020
Metal ions and sugar puckering balance single-molecule kinetic heterogeneity in RNA and DNA tertiary contacts
FD Steffen, M Khier, D Kowerko, RA Cunha, R Börner, RKO Sigel
Nature communications 11 (1), 104, 2020
212020
Enhanced ab initio molecular dynamics exploration unveils the complex role of different intramolecular bases on the water nucleophilic attack mechanism
M Schilling, RA Cunha, S Luber
ACS Catalysis 10 (14), 7657-7667, 2020
162020
Molecular modeling of enzyme attachment on AFM probes
GS Oliveira, FL Leite, AM Amarante, EF Franca, RA Cunha, JM Briggs, ...
Journal of Molecular Graphics and Modelling 45, 128-136, 2013
162013
Molecular Modeling Applied to Nanobiosystems
AM Amarante, GS Oliveira, JCM Ierich, RA Cunha, LCG Freitas, ...
32017
FRET-guided modeling of nucleic acids
FD Steffen, RA Cunha, RKO Sigel, R Borner
bioRxiv, 2023.08. 07.552238, 2023
22023
Caracterização molecular do mecanismo de interação de quitosanas com bicamadas lipídicas compostas de dipalmitoilfosfatidilcolina
RA Cunha
Universidade Federal de Uberlândia, 2013
12013
Mg2+/RNA binding: Insights from atomistic molecular dynamics with enhanced sampling
R Cunha, G Bussi
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Descrição molecular das interações específicas entre quitosanas e modelos de membranas celulares
RA Cunha, RD Lins, ON Oliveira Junior, EF Franca
Anais, 2012
2012
Caracterização molecular das interações específicas entre quitosanas e bicamadas lipídicas
RA Cunha, RD Lins, ON Oliveira Junior, EF Franca
Programa e Resumos, 2012
2012
Interaction mechanism between chitosan and membranes models unveiled by molecular dynamics simulation
RA Cunha, RD Lins, ON Oliveira Junior, EF Franca
Program Book, 2012
2012
Sequential QM/MM simulation to design an enzyme-based nanobiosensor using atomic force microscopy
RA Cunha, FL Leite, ON Oliveira Junior, EF Franca
Program Book, 2011
2011
Molecular dynamics simulations of the interaction between chitosan and membrane cell models
RA Cunha, RD Lins, EF Franca, ON Oliveira Junior
Livro de resumos, 2011
2011
Supplementary Information Zooming in on the O–O Bond Formation-an ab initio Molecular Dynamics Study Applying Enhanced Sampling Techniques
M Schilling, RA Cunha, S Luber
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Articles 1–19