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Ipek Oguz
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Framework for the statistical shape analysis of brain structures using SPHARM-PDM
M Styner, I Oguz, S Xu, C Brechbühler, D Pantazis, JJ Levitt, ME Shenton, ...
Medical image computing and computer-assisted intervention: MICCAI …, 2006
5442006
DTIPrep: quality control of diffusion-weighted images
I Oguz, M Farzinfar, J Matsui, F Budin, Z Liu, G Gerig, HJ Johnson, ...
Frontiers in neuroinformatics 8, 4, 2014
2732014
Adolescent binge ethanol treatment alters adult brain regional volumes, cortical extracellular matrix protein and behavioral flexibility
LG Coleman Jr, W Liu, I Oguz, M Styner, FT Crews
Pharmacology Biochemistry and Behavior 116, 142-151, 2014
1722014
Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent
RJ Lipinski, P Hammond, SK O’Leary-Moore, JJ Ament, SJ Pecevich, ...
PLoS One 7 (8), e43067, 2012
1602012
Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis
A Carass, S Roy, A Gherman, JC Reinhold, A Jesson, T Arbel, O Maier, ...
Scientific Reports 10 (1), 1-19, 2020
1442020
Computed tomography predictors of response to endobronchial valve lung reduction treatment. Comparison with Chartis
M Schuhmann, P Raffy, Y Yin, D Gompelmann, I Oguz, R Eberhardt, ...
American journal of respiratory and critical care medicine 191 (7), 767-774, 2015
1402015
User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP
PA Yushkevich, A Pashchinskiy, I Oguz, S Mohan, JE Schmitt, JM Stein, ...
Neuroinformatics 17 (1), 83-102, 2019
1392019
Mechanically Induced Focal Adhesion Assembly Amplifies Anti‐Adipogenic Pathways in Mesenchymal Stem Cells
B Sen, C Guilluy, Z Xie, N Case, M Styner, J Thomas, I Oguz, C Rubin, ...
STEM CELLS 29 (11), 1829-1836, 2011
932011
RATS: Rapid Automatic Tissue Segmentation in rodent brain MRI
I Oguz, H Zhang, A Rumple, M Sonka
Journal of neuroscience methods 221, 175-182, 2014
912014
Multiple sclerosis lesion segmentation with tiramisu and 2.5 d stacked slices
H Zhang, AM Valcarcel, R Bakshi, R Chu, F Bagnato, RT Shinohara, ...
Medical Image Computing and Computer Assisted Intervention–MICCAI 2019: 22nd …, 2019
772019
Postnatal day 7 ethanol treatment causes persistent reductions in adult mouse brain volume and cortical neurons with sex specific effects on neurogenesis
LG Coleman Jr, I Oguz, J Lee, M Styner, FT Crews
Alcohol 46 (6), 603-612, 2012
692012
Statistical group differences in anatomical shape analysis using Hotelling T2 metric
M Styner, I Oguz, S Xu, D Pantazis, G Gerig
Medical Imaging, 65123Z-65123Z-11, 2007
65*2007
Brain abnormalities in bipolar disorder detected by quantitative T1ρ mapping
CP Johnson, RL Follmer, I Oguz, LA Warren, GE Christensen, ...
Molecular psychiatry 20 (2), 201-206, 2015
612015
Understanding and Interpreting Machine Learning in Medical Image Computing Applications
D Stoyanov, Z Taylor, SM Kia, I Oguz, M Reyes, A Martel, L Maier-Hein, ...
Springer International Publishing, 2018
562018
Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice
SE Parnell, HT Holloway, SK O'Leary-Moore, DB Dehart, B Paniaqua, ...
Neurotoxicology and teratology 39, 77-83, 2013
552013
CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation
R Dorent, A Kujawa, M Ivory, S Bakas, N Rieke, S Joutard, B Glocker, ...
Medical Image Analysis 83, 102628, 2023
542023
3-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain
A Rumple, M McMurray, J Johns, J Lauder, P Makam, M Radcliffe, I Oguz
PLOS ONE 8 (7), e67334, 2013
532013
Comparison of Magnetic Resonance Imaging in Live vs. Post Mortem Rat Brains
I Oguz, R Yaxley, F Budin, M Hoogstoel, J Lee, E Maltbie, W Liu, ...
PLOS ONE 8 (8), e71027, 2013
522013
Automated segmentation of the choroid in EDI-OCT images with retinal pathology using convolution neural networks
M Chen, J Wang, I Oguz, BL VanderBeek, JC Gee
Fetal, Infant and Ophthalmic Medical Image Analysis: International Workshop …, 2017
482017
Cortical correspondence using entropy-based particle systems and local features
I Oguz, J Cates, T Fletcher, R Whitaker, D Cool, S Aylward, M Styner
Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE …, 2008
462008
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