| Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics SJ Callister, RC Barry, JN Adkins, ET Johnson, W Qian, ... Journal of proteome research 5 (2), 277-286, 2006 | 404 | 2006 |
| Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury LE Gralinski, A Bankhead III, S Jeng, VD Menachery, S Proll, SE Belisle, ... MBio 4 (4), e00271-13, 2013 | 240 | 2013 |
| Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses VD Menachery, AJ Eisfeld, A Schäfer, L Josset, AC Sims, S Proll, S Fan, ... MBio 5 (3), e01174-14, 2014 | 238 | 2014 |
| Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics BJM Webb-Robertson, HK Wiberg, MM Matzke, JN Brown, J Wang, ... Journal of proteome research 14 (5), 1993-2001, 2015 | 236 | 2015 |
| Challenges in biomarker discovery: combining expert insights with statistical analysis of complex omics data JE McDermott, J Wang, H Mitchell, BJ Webb-Robertson, R Hafen, ... Expert opinion on medical diagnostics 7 (1), 37-51, 2013 | 204 | 2013 |
| MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape VD Menachery, A Schäfer, KE Burnum-Johnson, HD Mitchell, AJ Eisfeld, ... Proceedings of the National Academy of Sciences 115 (5), E1012-E1021, 2018 | 167 | 2018 |
| MARRVEL: integration of human and model organism genetic resources to facilitate functional annotation of the human genome J Wang, R Al-Ouran, Y Hu, SY Kim, YW Wan, MF Wangler, S Yamamoto, ... The American Journal of Human Genetics 100 (6), 843-853, 2017 | 151 | 2017 |
| Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size H Zhang, KE Burnum, ML Luna, BO Petritis, JS Kim, WJ Qian, RJ Moore, ... Proteomics 11 (23), 4569-4577, 2011 | 148 | 2011 |
| MPLEx: a robust and universal protocol for single-sample integrative proteomic, metabolomic, and lipidomic analyses ES Nakayasu, CD Nicora, AC Sims, KE Burnum-Johnson, YM Kim, ... MSystems 1 (3), e00043-16, 2016 | 143 | 2016 |
| The cancer microbiome: distinguishing direct and indirect effects requires a systemic view JB Xavier, VB Young, J Skufca, F Ginty, T Testerman, AT Pearson, ... Trends in cancer 6 (3), 192-204, 2020 | 139 | 2020 |
| The undiagnosed diseases network: accelerating discovery about health and disease RB Ramoni, JJ Mulvihill, DR Adams, P Allard, EA Ashley, JA Bernstein, ... The American Journal of Human Genetics 100 (2), 185-192, 2017 | 137 | 2017 |
| Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells AC Sims, SC Tilton, VD Menachery, LE Gralinski, A Schäfer, MM Matzke, ... Journal of virology 87 (7), 3885-3902, 2013 | 128 | 2013 |
| Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice JG Teeguarden, BJ Webb-Robertson, KM Waters, AR Murray, ER Kisin, ... Toxicological Sciences 120 (1), 123-135, 2011 | 117 | 2011 |
| A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics BJM Webb-Robertson, WR Cannon, CS Oehmen, AR Shah, ... Bioinformatics 26 (13), 1677-1683, 2010 | 111 | 2010 |
| Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution PD Piehowski, Y Zhu, LM Bramer, KG Stratton, R Zhao, DJ Orton, ... Nature communications 11 (1), 8, 2020 | 97 | 2020 |
| A syndromic neurodevelopmental disorder caused by de novo variants in EBF3 HT Chao, M Davids, E Burke, JG Pappas, JA Rosenfeld, AJ McCarty, ... The American Journal of Human Genetics 100 (1), 128-137, 2017 | 96 | 2017 |
| A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label‐free LC‐MS proteomics experiments MM Matzke, JN Brown, MA Gritsenko, TO Metz, JG Pounds, KD Rodland, ... Proteomics 13 (3-4), 493-503, 2013 | 95 | 2013 |
| The impact of proinflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabetes M Ramos-Rodríguez, H Raurell-Vila, ML Colli, MI Alvelos, ... Nature genetics 51 (11), 1588-1595, 2019 | 91 | 2019 |
| Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data BJM Webb-Robertson, LA McCue, KM Waters, MM Matzke, JM Jacobs, ... Journal of proteome research 9 (11), 5748-5756, 2010 | 90 | 2010 |
| A statistical selection strategy for normalization procedures in LC‐MS proteomics experiments through dataset‐dependent ranking of normalization scaling factors BJM Webb‐Robertson, MM Matzke, JM Jacobs, JG Pounds, KM Waters Proteomics 11 (24), 4736-4741, 2011 | 88 | 2011 |
