Dmitri Pervouchine

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Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Sarah DjebaliIRSD, INSERM U1220, ToulouseVerified email at inserm.fr
Marta MeléGroup Leader at Barcelona Supercomputing CenterVerified email at bsc.es
Michael SammethInstitute of Biophysics Carlos Chagas Filho (IBCCF), Federal University of Rio de Janeiro (UFRJ)Verified email at sammeth.net
Jean MonlongINSERM IRSD, Toulouse, FranceVerified email at inserm.fr
David S. DeLucaHannover Medical SchoolVerified email at mh-hannover.de
Rory JohnsonUniversity College DublinVerified email at ucd.ie
Pedro G. FerreiraDepartment of Computer Science, Faculty of Sciences University of Porto; INESC-TECVerified email at fc.up.pt
Ayellet SegreAssistant Professor at Dept. of Ophthalmology, Harvard Medical School, Massachusetts Eye and EarVerified email at meei.harvard.edu
Nancy KopellBoston UniversityVerified email at bu.edu
Alessandra BreschiStanford UniversityVerified email at stanford.edu
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Alexander DobinCold Spring Harbor LaboratoryVerified email at cshl.edu
Tuuli LappalainenSciLifeLab, KTH Royal Institute of Technology & New York Genome CenterVerified email at nygenome.org
Mark O. CunninghamDiscipline of Physiology, Trinity College DublinVerified email at tcd.ie
James J CollinsMIT; Wyss Institute, Harvard; Broad Institute of MIT & HarvardVerified email at mit.edu
Chunming Ding 丁春明Wenzhou Medical UniversityVerified email at wmu.edu.cn
John A. WhiteProfessor & Chair of Biomedical Engineering, Boston U.Verified email at bu.edu
Rafael A IrizarryProfessor, Biostatistics and Computational Biology, Dana-Farber and HarvardVerified email at ds.dfci.harvard.edu
Christopher MasonProfessor of Genomics, Physiology, & Biophysics, Weill Cornell MedicineVerified email at med.cornell.edu

Dmitri Pervouchine

Skolkovo Institute for Science and Technology

Verified email at skoltech.ru - Homepage

bioinformatics genomics computational neuroscience big data in biology and medicine applied statistical methods


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A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1964	2014
The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015	1346	2015
Engineered riboregulators enable post-transcriptional control of gene expression FJ Isaacs, DJ Dwyer, C Ding, DD Pervouchine, CR Cantor, JJ Collins Nature biotechnology 22 (7), 841-847, 2004	729	2004
Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010	461	2010
Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014	337	2014
The effects of death and post-mortem cold ischemia on human tissue transcriptomes PG Ferreira, M Muñoz-Aguirre, F Reverter, CP Sa Godinho, A Sousa, ... Nature communications 9 (1), 490, 2018	280	2018
A benchmark for RNA-seq quantification pipelines M Teng, MI Love, CA Davis, S Djebali, A Dobin, BR Graveley, S Li, ... Genome biology 17, 1-12, 2016	232	2016
Slow and fast inhibition and an H-current interact to create a theta rhythm in a model of CA1 interneuron network HG Rotstein, DD Pervouchine, CD Acker, MJ Gillies, JA White, EH Buhl, ... Journal of neurophysiology 94 (2), 1509-1518, 2005	201	2005
Neuronal metabolism governs cortical network response state MO Cunningham, DD Pervouchine, C Racca, NJ Kopell, CH Davies, ... Proceedings of the National Academy of Sciences 103 (14), 5597-5601, 2006	199	2006
Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction A Frankish, B Uszczynska, GRS Ritchie, JM Gonzalez, D Pervouchine, ... BMC genomics 16, 1-11, 2015	116	2015
Gamma and theta rhythms in biophysical models of hippocampal circuits N Kopell, C Börgers, D Pervouchine, P Malerba, A Tort Hippocampal microcircuits: A computational modeler’s resource book, 423-457, 2010	113	2010
Gene-specific patterns of expression variation across organs and species A Breschi, S Djebali, J Gillis, DD Pervouchine, A Dobin, CA Davis, ... Genome biology 17, 1-13, 2016	105	2016
Intron-centric estimation of alternative splicing from RNA-seq data DD Pervouchine, DG Knowles, R Guigo Bioinformatics 29 (2), 273-274, 2013	104	2013
IRIS: intermolecular RNA interaction search DD Pervouchine Genome Informatics 15 (2), 92-101, 2004	101	2004
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 5903, 2015	93	2015
Modulation of alternative splicing by long-range RNA structures in Drosophila VA Raker, AA Mironov, MS Gelfand, DD Pervouchine Nucleic acids research 37 (14), 4533-4544, 2009	80	2009
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA LV Danilova, DD Pervouchine, AV Favorov, AA Mironov Journal of bioinformatics and computational biology 4 (02), 589-596, 2006	78	2006
Evidence for widespread association of mammalian splicing and conserved long-range RNA structures DD Pervouchine, EE Khrameeva, MY Pichugina, OV Nikolaienko, ... Rna 18 (1), 1-15, 2012	71	2012
Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay D Pervouchine, Y Popov, A Berry, B Borsari, A Frankish, R Guigó Nucleic acids research 47 (10), 5293-5306, 2019	62	2019
Low-dimensional maps encoding dynamics in entorhinal cortex and hippocampus DD Pervouchine, TI Netoff, HG Rotstein, JA White, MO Cunningham, ... Neural computation 18 (11), 2617-2650, 2006	58	2006

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