Clement Jonquet

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Mark MusenStanford Medicine Professor of Biomedical Informatics Research, Stanford UniversityVerified email at stanford.edu
Nigam ShahProfessor of Medicine, and Biomedical Data Science, Stanford UniversityVerified email at stanford.edu
Stefano A. CerriVicePres.R&D DKTS,Milano(I); Em.Prof. Informatics,Un.Montpellier(F); Dist.Fellow FBK,Trento(I)Verified email at didaelkts.it
Natasha NoyGoogleVerified email at google.com
Mathieu RocheCIRAD, TETISVerified email at cirad.fr
Maguelonne TeisseireINRAEVerified email at inrae.fr
Juan Antonio Lossio-VenturaResearch Scientist, National Institutes of HealthVerified email at nih.gov
Vincent EmonetData science developer, Institute of Data Science at Maastricht UniversityVerified email at maastrichtuniversity.nl
Pierre LarmandeIRD (Institute of Research for Development) - DIADE UnitVerified email at ird.fr
Trish WhetzelEMBL-EBIVerified email at ebi.ac.uk
Anne TouletCIRAD (French Agricultural Research Centre for International Development)Verified email at cirad.fr
Margaret-Anne StoreyProfessor of Computer Science, University of VictoriaVerified email at uvic.ca
Elizabeth ArnaudBioversity InternationalVerified email at cgiar.org
Adrien CouletInria ParisVerified email at inria.fr
Christopher G. ChuteBloomberg Distinguished Professor of Health Informatics, Johns HopkinsVerified email at jhu.edu
Pascal DugenieALGO.SOLUTIONSVerified email at dugenie.fr
John GraybealTechnical Program Manager, Stanford UniversityVerified email at stanford.edu
Andon TchechmedjievAssociate Professor at IMT Mines Alès / EuroMov DHMVerified email at mines-ales.fr
Valeria PesceData Scientist & Partnerships Facilitator at the Food and Agriculture Organization of the UnitedVerified email at fao.org
Amina AnnaneGeotrendVerified email at geotrend.fr

Clement Jonquet

Senior Researcher – INRAE (MISTEA) & Associate Researcher – Univ. of Montpellier (LIRMM)

Verified email at lirmm.fr - Homepage

Ontologies Semantic Web Semantic annotation ontology repository knowledge graphs


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BioPortal: ontologies and integrated data resources at the click of a mouse NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ... Nucleic acids research 37 (suppl_2), W170-W173, 2009	1078	2009
The open biomedical annotator C Jonquet, NH Shah, MA Musen Summit on translational bioinformatics 2009, 56, 2009	345	2009
Comparison of concept recognizers for building the Open Biomedical Annotator NH Shah, N Bhatia, C Jonquet, D Rubin, AP Chiang, MA Musen BMC bioinformatics 10, 1-9, 2009	185	2009
AgroPortal: A vocabulary and ontology repository for agronomy C Jonquet, A Toulet, E Arnaud, S Aubin, ED Yeumo, V Emonet, ... Computers and Electronics in Agriculture 144, 126-143, 2018	157	2018
Ontology-driven indexing of public datasets for translational bioinformatics NH Shah, C Jonquet, AP Chiang, AJ Butte, R Chen, MA Musen BMC bioinformatics 10, 1-10, 2009	148	2009
NCBO Resource Index: Ontology-based search and mining of biomedical resources C Jonquet, P LePendu, S Falconer, A Coulet, NF Noy, MA Musen, ... Journal of Web Semantics 9 (3), 316-324, 2011	127	2011
NCBO annotator: semantic annotation of biomedical data C Jonquet, N Shah, C Youn, C Callendar, MA Storey, M Musen International semantic web conference, poster and demo session 110, 1-3, 2009	120	2009
Building a biomedical ontology recommender web service C Jonquet, MA Musen, NH Shah Journal of biomedical semantics 1 (1), 1-18, 2010	106	2010
Biomedical term extraction: overview and a new methodology JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire Information Retrieval Journal 19, 59-99, 2016	97	2016
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation M Martínez-Romero, C Jonquet, MJ O’connor, J Graybeal, A Pazos, ... Journal of biomedical semantics 8 (1), 1-22, 2017	93	2017
What four million mappings can tell you about two hundred ontologies A Ghazvinian, NF Noy, C Jonquet, N Shah, MA Musen The Semantic Web-ISWC 2009: 8th International Semantic Web Conference, ISWC …, 2009	75	2009
A system for ontology-based annotation of biomedical data C Jonquet, MA Musen, N Shah Data Integration in the Life Sciences: 5th International Workshop, DILS 2008 …, 2008	60	2008
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture L Harper, J Campbell, EKS Cannon, S Jung, M Poelchau, R Walls, ... Database 2018, 2018	54	2018
BioPortal: ontologies and data resources with the click of a mouse M Musen, N Shah, N Noy, B Dai, M Dorf, N Griffith, JD Buntrock, ... AMIA Annu Symp Proc 6, 1223-1224, 2008	54	2008
Yet another ranking function for automatic multiword term extraction JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire Advances in Natural Language Processing: 9th International Conference on NLP …, 2014	52	2014
Combining c-value and keyword extraction methods for biomedical terms extraction JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire LBM: Languages in Biology and Medicine, 2013	50	2013
BIOTEX: A system for biomedical terminology extraction, ranking, and validation JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire ISWC: International Semantic Web Conference, 157-160, 2014	47	2014
BioPortal: ontologies and integrated data resources at the click of a mouse P Whetzel, N Shah, N Noy, B Dai, M Dorf, N Griffith, C Jonquet, C Youn, ... Nature Precedings, 1-1, 2009	42	2009
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison P Monnin, J Legrand, G Husson, P Ringot, A Tchechmedjiev, C Jonquet, ... BMC bioinformatics 20 (4), 1-16, 2019	32	2019
FAIRness literacy: the Achilles’ heel of applying FAIR principles R David, L Mabile, A Specht, S Stryeck, M Thomsen, M Yahia, C Jonquet, ... CODATA Data Science Journal 19 (32), 1-11, 2020	31	2020

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