Adrien Coulet

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Amedeo NapoliSenior researcher in computer science, LORIA (CNRS - Inria - U. Lorraine), NancyVerified email at loria.fr
Malika Smaïl-TabboneAssociate professor in Computer Science, Université de Lorraine, FranceVerified email at loria.fr
Nigam ShahProfessor of Medicine, and Biomedical Data Science, Stanford UniversityVerified email at stanford.edu
Marie-Dominique DevignesCNRS, LORIA UMR7503Verified email at loria.fr
Mark MusenStanford Medicine Professor of Biomedical Informatics Research, Stanford UniversityVerified email at stanford.edu
Pierre MonninJunior Fellow in AI at Wimmics (Université Côte d'Azur, Inria, CNRS, I3S)Verified email at inria.fr
Clement JonquetSenior Researcher – INRAE (MISTEA) & Associate Researcher – Univ. of Montpellier (LIRMM)Verified email at lirmm.fr
Russ B AltmanProfessor Stanford UniversityVerified email at stanford.edu
Natasha NoyGoogleVerified email at google.com
Legrand JoëlLoria (INRIA, CNRS, Université de Lorraine) - CentraleSupélecVerified email at loria.fr
Yannick ToussaintProfesseur en informatique, Laboratoire LORIAVerified email at loria.fr
Michel DumontierDistinguished Professor of Data Science, Maastricht UniversityVerified email at maastrichtuniversity.nl
Chedy RaïssiResearch scientist at INRIAVerified email at inria.fr
Emmanuel BressoUniversité de Lorraine, CNRS, Inria, LORIAVerified email at loria.fr
Cedric BousquetHospital practitioner, CHU de Saint EtienneVerified email at chu-st-etienne.fr
Miguel CouceiroProfessor at LORIA (CNRS – Inria Nancy Grand Est – Université de Lorraine)Verified email at inria.fr
Fatima RodriguezAssistant Professor in Cardiovascular Medicine, Stanford UniversityVerified email at stanford.edu
Latha PalaniappanStanford University School of MedicineVerified email at stanford.edu
Paea LePenduUniversity of California, RiversideVerified email at ucr.edu
Kevin DalleauPhD Student, LORIA, Université de LorraineVerified email at loria.fr

Adrien Coulet

Inria Paris

Verified email at inria.fr - Homepage

Biomedical Informatics Bioinformatics Knowledge discovery Semantic Web Pharmacogenomics


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Using text to build semantic networks for pharmacogenomics A Coulet, NH Shah, Y Garten, M Musen, RB Altman Journal of biomedical informatics 43 (6), 1009-1019, 2010	138	2010
NCBO Resource Index: Ontology-based search and mining of biomedical resources C Jonquet, P LePendu, S Falconer, A Coulet, NF Noy, MA Musen, ... Journal of Web Semantics 9 (3), 316-324, 2011	129	2011
Recent progress in automatically extracting information from the pharmacogenomic literature Y Garten, A Coulet, RB Altman Pharmacogenomics 11 (10), 1467-1489, 2010	102	2010
Atherosclerotic cardiovascular disease risk prediction in disaggregated Asian and Hispanic subgroups using electronic health records F Rodriguez, S Chung, MR Blum, A Coulet, S Basu, LP Palaniappan Journal of the American Heart Association 8 (14), e011874, 2019	82	2019
Creating fair models of atherosclerotic cardiovascular disease risk S Pfohl, B Marafino, A Coulet, F Rodriguez, L Palaniappan, NH Shah Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, 271-278, 2019	75	2019
Results of the ontology alignment evaluation initiative 2020 MAN Pour, A Algergawy, R Amini, D Faria, I Fundulaki, I Harrow, ... 15th International Workshop on Ontology Matching (OM 2020) 2788, 92-138, 2020	66	2020
Integration and publication of heterogeneous text-mined relationships on the Semantic Web A Coulet, Y Garten, M Dumontier, RB Altman, MA Musen, NH Shah Journal of biomedical semantics 2, 1-16, 2011	50	2011
Method and system for extraction and normalization of relationships via ontology induction A Coulet, NH Shah, Y Garten, M Musen, RB Altman US Patent 10,025,774, 2018	45	2018
BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse PL Whetzel, NH Shah, NF Noy, B Dai, M Dorf, N Griffith, C Jonquet, ... 1st International Conference on Biomedical Ontology (ICBO 2009), Poster …, 2009	44	2009
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison P Monnin, J Legrand, G Husson, P Ringot, A Tchechmedjiev, C Jonquet, ... BMC bioinformatics 20, 1-16, 2019	39	2019
Ontology-guided data preparation for discovering genotype-phenotype relationships A Coulet, M Smaïl-Tabbone, P Benlian, A Napoli, MD Devignes BMC bioinformatics 9, 1-9, 2008	37	2008
Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing A Coulet, M Smaïl-Tabbone, A Napoli, MD Devignes OTM Confederated International Conferences" On the Move to Meaningful …, 2006	36	2006
PGxCorpus, a manually annotated corpus for pharmacogenomics J Legrand, R Gogdemir, C Bousquet, K Dalleau, MD Devignes, W Digan, ... Scientific data 7 (1), 3, 2020	29	2020
Using pattern structures for analyzing ontology-based annotations of biomedical data A Coulet, F Domenach, M Kaytoue, A Napoli International Conference on Formal Concept Analysis, 76-91, 2013	27	2013
Extracting disease-symptom relationships by learning syntactic patterns from dependency graphs M Hassan, O Makkaoui, A Coulet, Y Toussaint BioNLP 15, 184, 2015	22	2015
Semantically enabling pharmacogenomic data for the realization of personalized medicine M Samwald, A Coulet, I Huerga, RL Powers, JS Luciano, RR Freimuth, ... Pharmacogenomics 13 (2), 201-212, 2012	21	2012
Syntax-based transfer learning for the task of biomedical relation extraction J Legrand, Y Toussaint, C Raïssi, A Coulet Journal of Biomedical Semantics 12, 1-11, 2021	20	2021
Investigating ADR mechanisms with explainable AI: a feasibility study with knowledge graph mining E Bresso, P Monnin, C Bousquet, FÉ Calvier, NC Ndiaye, N Petitpain, ... BMC medical informatics and decision making 21 (1), 171, 2021	17	2021
SNP-Converter: An ontology-based solution to reconcile heterogeneous SNP descriptions for pharmacogenomic studies A Coulet, M Smaïl-Tabbone, P Benlian, A Napoli, MD Devignes International Workshop on Data Integration in the Life Sciences, 82-93, 2006	17	2006
Technical, ethical, legal, and societal challenges with digital twin systems for the management of chronic diseases in children and young people D Drummond, A Coulet Journal of Medical Internet Research 24 (10), e39698, 2022	16	2022

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