Luis Pedro Coelho

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Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerified email at embl.de
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerified email at ethz.ch
Sofia Kirke Forslund-StartcevaProfessor of Applied Microbiology, Charité Berlin & Guest Group Leader, MDC BerlinVerified email at mdc-berlin.de
Thomas Sebastian B. SchmidtSchool of Medicine & APC Microbiome, University College CorkVerified email at ucc.ie
Falk HildebrandGroup Leader, Quadram & Earlham Institute, Norwich, UKVerified email at quadram.ac.uk
Robert F. MurphyProfessor of Computational Biology Emeritus, Carnegie Mellon UniversityVerified email at cmu.edu
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerified email at amsterdamumc.nl
Georg ZellerLUMC Leiden & EMBL HeidelbergVerified email at embl.de
Paul Igor CosteaBASFVerified email at basf.com
Oleksandr M. MaistrenkoRoyal Netherlands Institute for Sea Research (NIOZ)Verified email at nioz.nl
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch
Joshua D. KangasAssistant Teaching Professor, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Askarbek N OrakovEuropean Molecular Biology Laboratory (EMBL), Bork GroupVerified email at embl.de
Renato AlvesEuropean Molecular Biology LaboratoryVerified email at embl.de
Xing-Ming ZhaoFudan UniversityVerified email at fudan.edu.cn
Henrik Bjørn NielsenChief Scientific Officer, Clinical-Microbiomics A/SVerified email at clinical-microbiomics.com
Lucas PaoliSchool of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL)Verified email at epfl.ch
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud SpecialistVerified email at kfst.dk
Shaojun PanISTBI, Fudan universityVerified email at fudan.edu.cn

Luis Pedro Coelho

Centre for Microbiome Research, Queensland University of Technology

Verified email at qut.edu.au - Homepage

Computational Biology Microbiome Microbial ecology Metagenomics Bioinformatics


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Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 2015	2521	2015
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Mol Biol Evol, msx148, 2017	2334	2017
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233-237, 2018	1774	2018
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019	972	2019
A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014	790	2014
Towards standards for human fecal sample processing in metagenomic studies. PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ... Nature biotechnology, 2017	775	2017
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature, 2016	749	2016
Recovery of gut microbiota of healthy adults following antibiotic exposure A Palleja, KH Mikkelsen, SK Forslund, A Kashani, KH Allin, T Nielsen, ... Nature microbiology 3 (11), 1255-1265, 2018	666	2018
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients JR Bedarf, F Hildebrand, LP Coelho, S Sunagawa, M Bahram, F Goeser, ... Genome medicine 9, 1-13, 2017	586	2017
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	521	2013
Extensive transmission of microbes along the gastrointestinal tract TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ... eLife 8, e42693, 2019	438	2019
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature Communications 10 (1), 1014, 2019	403	2019
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis S Vieira-Silva, G Falony, E Belda, T Nielsen, J Aron-Wisnewsky, ... Nature 581 (7808), 310-315, 2020	373	2020
Global trends in marine plankton diversity across kingdoms of life FM Ibarbalz, N Henry, MC Brandão, S Martini, G Busseni, H Byrne, ... Cell 179 (5), 1084-1097. e21, 2019	351	2019
Host-cell sensors for Plasmodium activate innate immunity against liver-stage infection P Liehl, V Zuzarte-Luís, J Chan, T Zillinger, F Baptista, D Carapau, ... Nature medicine 20 (1), 47-53, 2014	334	2014
A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nature biotechnology 32 (12), 1213-1222, 2014	328	2014
Selective maternal seeding and environment shape the human gut microbiome K Korpela, PI Costea, LP Coelho, S Kandels-Lewis, G Willemsen, ... Genome Research, gr. 233940.117, 2018	320	2018
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019	318	2019
Mahotas: Open source software for scriptable computer vision LP Coelho Journal of Open Research Software 1, e3, 2013	291	2013
Similarity of the dog and human gut microbiomes in gene content and response to diet LP Coelho, JR Kultima, PI Costea, C Fournier, Y Pan, ... Microbiome 6 (1), 72, 2018	288	2018

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