Chih Hsuan Wei
Chih Hsuan Wei
NCBI (National Center for Biotechnology Information) / NLM / NIH
Verified email at
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BioCreative V CDR task corpus: a resource for chemical disease relation extraction
J Li, Y Sun, RJ Johnson, D Sciaky, CH Wei, R Leaman, AP Davis, ...
Database 2016, 2016
PubTator: a web-based text mining tool for assisting biocuration
CH Wei, HY Kao, Z Lu
Nucleic acids research 41 (W1), W518-W522, 2013
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task
CH Wei, Y Peng, R Leaman, AP Davis, CJ Mattingly, J Li, TC Wiegers, ...
Database 2016, baw032, 2016
PubTator Central: Automated Concept Annotation for Biomedical Full Text Articles
CH Wei, A Allot, R Leaman, Z Lu
Nucleic Acids Research 47 (W1), W587–W593, 2019
tmChem: a high performance approach for chemical named entity recognition and normalization
R Leaman, CH Wei, Z Lu
Journal of cheminformatics 7 (1), S3, 2015
GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains
CH Wei, HY Kao, Z Lu
BioMed Research International 2015, 918710, 2015
tmVar: a text mining approach for extracting sequence variants in biomedical literature
CH Wei, BR Harris, HY Kao, Z Lu
Bioinformatics 29 (11), 1433-1439, 2013
The gene normalization task in BioCreative III
Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ...
BMC bioinformatics 12 (8), S2, 2011
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC
A Allot, Y Peng, CH Wei, K Lee, L Phan, Z Lu
Nucleic acids research 46 (W1), W530-W536, 2018
On expert curation and scalability: UniProtKB/Swiss-Prot as a case study
S Poux, CN Arighi, M Magrane, A Bateman, CH Wei, Z Lu, E Boutet, ...
Bioinformatics 33 (21), 3454-3460, 2017
SR4GN: a species recognition software tool for gene normalization
CH Wei, HY Kao, Z Lu
PloS one 7 (6), e38460, 2012
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts
CH Wei, BR Harris, D Li, TZ Berardini, E Huala, HY Kao, Z Lu
Database 2012, bas041, 2012
Cross-species gene normalization by species inference
CH Wei, HY Kao
BMC bioinformatics 12 (8), S5, 2011
tmVar 2.0: Integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine
CH Wei, L Phan, J Feltz, R Maiti, T Hefferon, Z Lu
Bioinformatics, btx541, 2017
Improving chemical disease relation extraction with rich features and weakly labeled data
Y Peng, CH Wei, Z Lu
Journal of Cheminformatics 8 (1), 53, 2016
Annotating chemicals, diseases, and their interactions in biomedical literature
J Li, Y Sun, R Johnson, D Sciaky, CH Wei, R Leaman, AP Davis, ...
Proceedings of the fifth BioCreative challenge evaluation workshop, 173-182, 2015
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task
CN Arighi, B Carterette, KB Cohen, M Krallinger, WJ Wilbur, P Fey, ...
Database 2013, bas056, 2013
BioRED: a rich biomedical relation extraction dataset
L Luo, PT Lai, CH Wei, CN Arighi, Z Lu
Briefings in Bioinformatics, bbac282, 2022
Artificial intelligence in action: addressing the COVID-19 pandemic with natural language processing
Q Chen, R Leaman, A Allot, L Luo, CH Wei, S Yan, Z Lu
Annual review of biomedical data science 4 (1), 313-339, 2021
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