Jianhua Ruan
Jianhua Ruan
Verified email at
Cited by
Cited by
Characterization and identification of microRNA core promoters in four model species
X Zhou, J Ruan, G Wang, W Zhang
PLoS computational biology 3 (3), e37, 2007
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
J Ruan, GD Stormo, W Zhang
Bioinformatics 20 (1), 58-66, 2004
A general co-expression network-based approach to gene expression analysis: comparison and applications
J Ruan, AK Dean, W Zhang
BMC systems biology 4 (1), 8, 2010
Identifying network communities with a high resolution
J Ruan, W Zhang
Physical Review E 77 (1), 016104, 2008
Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana
W Zhang, J Ruan, TD Ho, Y You, T Yu, RS Quatrano
Bioinformatics 21 (14), 3074-3081, 2005
A novel link prediction algorithm for reconstructing protein–protein interaction networks by topological similarity
C Lei, J Ruan
Bioinformatics 29 (3), 355-364, 2013
An efficient spectral algorithm for network community discovery and its applications to biological and social networks
J Ruan, W Zhang
Seventh IEEE international conference on data mining (ICDM 2007), 643-648, 2007
Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases
M Ray, J Ruan, W Zhang
Genome Biology 9, 1-14, 2008
Genomic analyses of the RNA-binding protein Hu antigen R (HuR) identify a complex network of target genes and novel characteristics of its binding sites
PJ Uren, SC Burns, J Ruan, KK Singh, AD Smith, LOF Penalva
Journal of Biological Chemistry 286 (43), 37063-37066, 2011
The regulatory repertoire of PLZF and SALL4 in undifferentiated spermatogonia
DL Lovelace, Z Gao, K Mutoji, YC Song, J Ruan, BP Hermann
Development 143 (11), 1893-1906, 2016
Plasticity of the systemic inflammatory response to acute infection during critical illness: development of the riboleukogram
JE McDunn, KD Husain, AD Polpitiya, A Burykin, J Ruan, Q Li, ...
PloS one 3 (2), e1564, 2008
Enhancer reprogramming driven by high-order assemblies of transcription factors promotes phenotypic plasticity and breast cancer endocrine resistance
M Bi, Z Zhang, YZ Jiang, P Xue, H Wang, Z Lai, X Fu, C De Angelis, ...
Nature cell biology 22 (6), 701-715, 2020
Building and analyzing protein interactome networks by cross-species comparisons
AM Wiles, M Doderer, J Ruan, TT Gu, D Ravi, B Blackman, AJR Bishop
BMC systems biology 4 (1), 1-16, 2010
Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation
K Mitsuya, AN Parker, L Liu, J Ruan, MCM Vissers, L Myatt
PloS one 12 (10), e0186115, 2017
Comprehensive methylome analysis of ovarian tumors reveals hedgehog signaling pathway regulators as prognostic DNA methylation biomarkers
RL Huang, F Gu, NB Kirma, J Ruan, CL Chen, HC Wang, YP Liao, ...
Epigenetics 8 (6), 624-634, 2013
A network of conserved damage survival pathways revealed by a genomic RNAi screen
D Ravi, AM Wiles, S Bhavani, J Ruan, P Leder, AJR Bishop
PLoS genetics 5 (6), e1000527, 2009
Intratumoral CD56bright natural killer cells are associated with improved survival in bladder cancer
N Mukherjee, N Ji, V Hurez, TJ Curiel, MO Montgomery, AJ Braun, ...
Oncotarget 9 (92), 36492, 2018
EpCAM-regulated transcription exerts influences on nanomechanical properties of endometrial cancer cells that promote epithelial-to-mesenchymal transition
YT Hsu, P Osmulski, Y Wang, YW Huang, L Liu, J Ruan, VX Jin, NB Kirma, ...
Cancer research 76 (21), 6171-6182, 2016
ILM: a web server for predicting RNA secondary structures with pseudoknots
J Ruan, GD Stormo, W Zhang
Nucleic acids research 32 (suppl_2), W146-W149, 2004
The system can't perform the operation now. Try again later.
Articles 1–20