Juan Antonio Vizcaino

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Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Yasset Perez-RiverolTeam Coordinator, Proteomics Resources, EMBL-EBI, UKVerified email at ebi.ac.uk
Eric DeutschInstitute for Systems BiologyVerified email at systemsbiology.org
Johannes GrissPostDoc, EMBL-European Biofinformatics InstitueVerified email at ebi.ac.uk
Attila CsordasAgeCurve LimitedVerified email at agecurve.co.uk
Andrew JonesDepartment of Biochemistry and Systems Biology, ISMIB, University of LiverpoolVerified email at liverpool.ac.uk
Martin EisenacherMedizinische Bioinformatik, Medizinisches Proteom-Center, Ruhr-University BochumVerified email at rub.de
Lennart MartensSenior Full Professor of Systems Biology, Ghent University and VIB, Ghent, BelgiumVerified email at UGent.be
Gerhard MayerHeidelberger Institut für theoretische StudienVerified email at h-its.org
Andrew F. JarnuczakEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Pierre-Alain BinzHead of laboratory, Clinical chemistry laboratory, CHUVVerified email at chuv.ch
Richard CoteEuropean Bioinformatics InstituteVerified email at ebi.ac.uk
Julian UszkoreitMedical Bioinformatics, Ruhr University BochumVerified email at rub.de
Nuno BandeiraAssociate Professor, University of California, San DiegoVerified email at eng.ucsd.edu
Deepti Jaiswal KunduEMBL-EBI European Bioinformatics InstituteVerified email at ebi.ac.uk
Timo SachsenbergStaff Scientist, University of TübingenVerified email at uni-tuebingen.de
Jose A DianesEMBL - European Bioinformatics InstituteVerified email at chronomics.com
Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLVerified email at ebi.ac.uk
ENRIQUE MONTEUniversidad de SalamancaVerified email at usal.es
Zhi SunInstitute for Systems BiologyVerified email at systemsbiology.org

Juan Antonio Vizcaino

Proteomics Team Leader, EMBL-EBI

Verified email at ebi.ac.uk - Homepage

computational proteomics mass spectrometry bioinformatics


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The PRIDE database and related tools and resources in 2019: improving support for quantification data Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ... Nucleic acids research 47 (D1), D442-D450, 2019	5957	2019
2016 update of the PRIDE database and its related tools JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ... Nucleic acids research 44 (D1), D447-D456, 2016	3664	2016
ProteomeXchange provides globally coordinated proteomics data submission and dissemination JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ... Nature biotechnology 32 (3), 223-226, 2014	2617	2014
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences Y Perez-Riverol, J Bai, C Bandla, D García-Seisdedos, S Hewapathirana, ... Nucleic acids research 50 (D1), D543-D552, 2022	2176	2022
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 JA Vizcaíno, RG Côté, A Csordas, JA Dianes, A Fabregat, JM Foster, ... Nucleic acids research 41 (D1), D1063-D1069, 2012	1974	2012
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ... Nucleic acids research, gkw936, 2016	826	2016
Shorthand notation for lipid structures derived from mass spectrometry G Liebisch, JA Vizcaíno, H Köfeler, M Trötzmüller, WJ Griffiths, G Schmitz, ... Journal of lipid research 54 (6), 1523-1530, 2013	775	2013
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ... Nucleic acids research 48 (D1), D1145-D1152, 2020	600	2020
Expression Atlas update: from tissues to single cells I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ... Nucleic acids research 48 (D1), D77-D83, 2020	444	2020
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ... Nature methods 6 (6), 423-430, 2009	386	2009
Expression Atlas: gene and protein expression across multiple studies and organisms I Papatheodorou, NA Fonseca, M Keays, YA Tang, E Barrera, W Bazant, ... Nucleic acids research 46 (D1), D246-D251, 2018	374	2018
Making sense of big data in health research: towards an EU action plan C Auffray, R Balling, I Barroso, L Bencze, M Benson, J Bergeron, ... Genome medicine 8, 1-13, 2016	307	2016
The functional landscape of the human phosphoproteome D Ochoa, AF Jarnuczak, C Viéitez, M Gehre, M Soucheray, A Mateus, ... Nature biotechnology 38 (3), 365-373, 2020	279	2020
A guide to the Proteomics Identifications Database proteomics data repository JA Vizcaíno, R Côté, F Reisinger, J M Foster, M Mueller, J Rameseder, ... Proteomics 9 (18), 4276-4283, 2009	272	2009
The proteomics identifications database: 2010 update JA Vizcaíno, R Côté, F Reisinger, H Barsnes, JM Foster, J Rameseder, ... Nucleic acids research 38 (suppl 1), D736-D742, 2010	250	2010
The mzIdentML data standard for mass spectrometry-based proteomics results AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, S Hubbard, ... Molecular & Cellular Proteomics, 2012	222	2012
Making proteomics data accessible and reusable: current state of proteomics databases and repositories Y Perez‐Riverol, E Alpi, R Wang, H Hermjakob, JA Vizcaíno Proteomics 15 (5-6), 930-950, 2015	196	2015
PRIDE Converter: making proteomics data-sharing easy H Barsnes, JA Vizcaíno, I Eidhammer, L Martens Nature biotechnology 27 (7), 598-599, 2009	183	2009
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets J Griss, Y Perez-Riverol, S Lewis, DL Tabb, JA Dianes, N Del-Toro, ... Nature methods 13 (8), 651-656, 2016	175	2016
A high-stringency blueprint of the human proteome S Adhikari, EC Nice, EW Deutsch, L Lane, GS Omenn, SR Pennington, ... Nature communications 11 (1), 5301, 2020	164	2020

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