Marco Antoniotti

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Bud MishraProfessor of Computer Science and MathematicsVerified email at nyu.edu
Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor emeritus of Computer Science - University of Milano-BicoccaVerified email at unimib.it
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, SpainVerified email at cnag.crg.eu
Alberto PolicritiUniversity of UdineVerified email at uniud.it
Rocco PiazzaUniversity of Milano-BicoccaVerified email at unimib.it
Luca De SanoUniversità degli Studi di Milano BicoccaVerified email at campus.unimib.it
Naren RamakrishnanThomas L. Phillips Professor, Virginia TechVerified email at cs.vt.edu
Chiara DamianiDepartment of Biotechnology and BiosciencesVerified email at unimib.it
Italo ZoppisDipartimento di Informatica, Sistemistica e Comunicazione, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Carla PiazzaProfessor of Computer Science, University of UdineVerified email at uniud.it
Loes Olde LoohuisAssistant professor at UCLAVerified email at mednet.ucla.edu
De Matteis GiovanniDepartment of Mathematics and Information Sciences, Northumbria University, NewcastleVerified email at unipv.it
Daniele MericoVevo Tx / TCAG (SickKids)Verified email at vevo.ai
Isabella CastiglioniResearcher, IBFM CNRVerified email at ibfm.cnr.it
Claudia CavaIBFM-CNRVerified email at ibfm.cnr.it
Marco S. NobileAssociate Professor, Ca' Foscari University of VeniceVerified email at unive.it
Marzia Di FilippoUniversity of Milano-BicoccaVerified email at unimib.it

Marco Antoniotti

Professor of Computer Science, Università degli Studi di Milano-Bicocca

Verified email at unimib.it - Homepage

Computational Biology Bioinformatics Computer Science Machine Learning


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SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular Systems Biology 16 (8), e9110, 2020	173	2020
Model building and model checking for biochemical processes M Antoniotti, A Policriti, N Ugel, B Mishra Cell biochemistry and biophysics 38, 271-286, 2003	146	2003
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018	132	2018
Discrete event models+ temporal logic= supervisory controller: Automatic synthesis of locomotion controllers M Antoniotti, B Mishra Proceedings of 1995 IEEE International Conference on Robotics and Automation …, 1995	102	1995
Algorithmic algebraic model checking I: Challenges from systems biology C Piazza, M Antoniotti, V Mysore, A Policriti, F Winkler, B Mishra International Conference on Computer Aided Verification, 5-19, 2005	97	2005
CAPRI: efficient inference of cancer progression models from cross-sectional data D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ... Bioinformatics 31 (18), 3016-3026, 2015	94	2015
Algorithmic methods to infer the evolutionary trajectories in cancer progression G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ... PNAS 113 (28), E4025-E4034, 2016	89	2016
From bytes to bedside: data integration and computational biology for translational cancer research JP Mathew, BS Taylor, GD Bader, S Pyarajan, M Antoniotti, ... PLoS computational biology 3 (2), e12, 2007	82	2007
Inferring Tree Causal Models of Cancer Progression with Probability Raising L Olde Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ... PLoS ONE, 2014	67	2014
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development G De Matteis, A Graudenzi, M Antoniotti Journal of mathematical biology 66 (7), 1409-1462, 2013	63	2013
Foundations of a query and simulation system for the modeling of biochemical and biological processes M Antoniotti, F Park, A Policriti, N Ugel, B Mishra Biocomputing 2003, 116-127, 2002	60	2002
A comparison of machine learning techniques for survival prediction in breast cancer L Vanneschi, A Farinaccio, G Mauri, M Antoniotti, P Provero, M Giacobini BioData mining 4 (1), 1-13, 2011	56	2011
Taming the complexity of biochemical models through bisimulation and collapsing: theory and practice M Antoniotti, C Piazza, A Policriti, M Simeoni, B Mishra Theoretical Computer Science 325 (1), 45-67, 2004	53	2004
Synthesis and verification of discrete controllers for robotics and manufacturing devices with temporal logic and the Control-D system M Antoniotti New York University, 1995	50	1995
SHIFT and SMART-AHS: A Language for Hybrid System Engineering Modeling and Simulation. M Antoniotti, A Göllü DSL 97, 14-14, 1997	47	1997
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ... biorxiv.org, 2015	45	2015
Microsimulation analysis of automated vehicles on multiple merge junction highways M Antoniotti, A Deshpande, A Girault 1997 IEEE International Conference on Systems, Man, and Cybernetics …, 1997	43	1997
Method, system and software arrangement for reconstructing formal descriptive models of processes from functional/modal data using suitable ontology B Mishra, M Antoniotti, N Ramakrishnan US Patent 7,801,841, 2010	41	2010
A review of computational strategies for denoising and imputation of single-cell transcriptomic data L Patruno, D Maspero, F Craighero, F Angaroni, M Antoniotti, A Graudenzi Briefings in Bioinformatics, 2020	39	2020
Microsimulation analysis of multiple merge junctions under autonomous AHS operation M Antoniotti, A Desphande, A Girault Proceedings of Conference on Intelligent Transportation Systems, 147-152, 1997	39	1997

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