HexServer: an FFT-based protein docking server powered by graphics processors G Macindoe, L Mavridis, V Venkatraman, MD Devignes, DW Ritchie Nucleic acids research 38 (suppl_2), W445-W449, 2010 | 769 | 2010 |
Application of artificial intelligence to gastroenterology and hepatology C Le Berre, WJ Sandborn, S Aridhi, MD Devignes, L Fournier, ... Gastroenterology 158 (1), 76-94. e2, 2020 | 471 | 2020 |
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 429 | 2019 |
Integrative annotation of 21,037 human genes validated by full-length cDNA clones T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ... PLoS biology 2 (6), e162, 2004 | 425 | 2004 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 169 | 2016 |
Protein docking using case‐based reasoning AW Ghoorah, MD Devignes, M Smaïl‐Tabbone, DW Ritchie Proteins: Structure, Function, and Bioinformatics 81 (12), 2150-2158, 2013 | 133 | 2013 |
IntelliGO: a new vector-based semantic similarity measure including annotation origin S Benabderrahmane, M Smail-Tabbone, O Poch, A Napoli, MD Devignes BMC bioinformatics 11, 1-16, 2010 | 130 | 2010 |
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 128 | 2019 |
The Genexpress IMAGE knowledge base of the human brain transcriptome: a prototype integrated resource for functional and computational genomics G Piétu, R Mariage-Samson, NA Fayein, C Matingou, E Eveno, ... Genome research 9 (2), 195-209, 1999 | 121 | 1999 |
New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration C Ambroset, C Coluzzi, G Guédon, MD Devignes, V Loux, T Lacroix, ... Frontiers in microbiology 6, 1483, 2016 | 81 | 2016 |
Head-to-head comparison of clustering methods for heterogeneous data: a simulation-driven benchmark G Preud’Homme, K Duarte, K Dalleau, C Lacomblez, E Bresso, ... Scientific reports 11 (1), 4202, 2021 | 78 | 2021 |
IMAGE: molecular integration of the analysis of the human genome and its expression C Auffray, G Behar, F Bois, C Bouchier, C Da Silva, MD Devignes, ... Comptes Rendus de L'academie des sciences. Serie III, Sciences de la vie 318 …, 1995 | 75 | 1995 |
Activation of Peroxisome Proliferator-Activated Receptor Gamma by Human Cytomegalovirus for De Novo Replication Impairs Migration and Invasiveness of … B Rauwel, B Mariamé, H Martin, R Nielsen, S Allart, B Pipy, S Mandrup, ... Journal of virology 84 (6), 2946-2954, 2010 | 74 | 2010 |
Many-valued concept lattices for conceptual clustering and information retrieval N Messai, MD Devignes, A Napoli, M Smail-Tabbone ECAI 2008, 127-131, 2008 | 70 | 2008 |
Machine learning-derived echocardiographic phenotypes predict heart failure incidence in asymptomatic individuals M Kobayashi, O Huttin, M Magnusson, JP Ferreira, E Bozec, AC Huby, ... Cardiovascular Imaging 15 (2), 193-208, 2022 | 68 | 2022 |
Integrative relational machine-learning for understanding drug side-effect profiles E Bresso, R Grisoni, G Marchetti, AS Karaboga, M Souchet, MD Devignes, ... BMC bioinformatics 14, 1-11, 2013 | 61 | 2013 |
Report of the fifth international workshop on human chromosome 11 mapping 1996 TB Shows, M Alders, S Bennett, D Burbee, P Cartwright, ... Cytogenetics and cell genetics 74 (1-2), 1-56, 1996 | 61 | 1996 |
Querying a bioinformatic data sources registry with concept lattices N Messai, MD Devignes, A Napoli, M Smail-Tabbone International Conference on Conceptual Structures, 323-336, 2005 | 58 | 2005 |
A glimpse into the world of integrative and mobilizable elements in streptococci reveals an unexpected diversity and novel families of mobilization proteins C Coluzzi, G Guédon, MD Devignes, C Ambroset, V Loux, T Lacroix, ... Frontiers in microbiology 8, 443, 2017 | 45 | 2017 |
Spatial clustering of protein binding sites for template based protein docking AW Ghoorah, MD Devignes, M Smaïl-Tabbone, DW Ritchie Bioinformatics 27 (20), 2820-2827, 2011 | 44 | 2011 |