| The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans Tabula Sapiens Consortium Science 376 (6594), eabl4896, 2022 | 465 | 2022 |
| Optimal experimental design for materials discovery R Dehghannasiri, D Xue, PV Balachandran, MR Yousefi, LA Dalton, ... Computational Materials Science 129, 311-322, 2017 | 77 | 2017 |
| Optimal experimental design for gene regulatory networks in the presence of uncertainty R Dehghannasiri, BJ Yoon, ER Dougherty IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (4 …, 2014 | 63 | 2014 |
| Cell types of origin of the cell-free transcriptome SK Vorperian, MN Moufarrej, TS Consortium, SR Quake Nature Biotechnology, 1-7, 2022 | 56 | 2022 |
| Intrinsically Bayesian robust Kalman filter: An innovation process approach R Dehghannasiri, MS Esfahani, ER Dougherty IEEE Transactions on Signal Processing 65 (10), 2531-2546, 2017 | 49 | 2017 |
| Efficient experimental design for uncertainty reduction in gene regulatory networks R Dehghannasiri, BJ Yoon, ER Dougherty BMC bioinformatics 16, 1-18, 2015 | 37 | 2015 |
| Improved detection of gene fusions by applying statistical methods reveals oncogenic RNA cancer drivers R Dehghannasiri, DE Freeman, M Jordanski, GL Hsieh, A Damljanovic, ... Proceedings of the National Academy of Sciences 116 (31), 15524-15533, 2019 | 29 | 2019 |
| RNA splicing programs define tissue compartments and cell types at single-cell resolution JE Olivieri*, R Dehghannasiri*, PL Wang, SR Jang, A De Morree, SY Tan, ... Elife 10, e70692, 2021 | 28 | 2021 |
| Optimal Bayesian Kalman filtering with prior update R Dehghannasiri, MS Esfahani, X Qian, ER Dougherty IEEE Transactions on Signal Processing 66 (8), 1982-1996, 2018 | 28 | 2018 |
| The SpliZ generalizes ‘Percent Spliced In’to reveal regulated splicing at single-cell resolution JE Olivieri*, R Dehghannasiri*, J Salzman Nature methods 19 (3), 307-310, 2022 | 20 | 2022 |
| Sequential experimental design for optimal structural intervention in gene regulatory networks based on the mean objective cost of uncertainty M Imani, R Dehghannasiri, UM Braga-Neto, ER Dougherty Cancer informatics 17, 1176935118790247, 2018 | 20 | 2018 |
| Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism Tabula Microcebus Consortium, C Ezran, S Liu, S Chang, J Ming, ... BioRxiv, 2021.12. 12.469460, 2021 | 18 | 2021 |
| Specific splice junction detection in single cells with SICILIAN R Dehghannasiri, JE Olivieri, A Damljanovic, J Salzman Genome Biology 22, 1-13, 2021 | 17 | 2021 |
| Intrinsically Bayesian robust karhunen-Loève compression R Dehghannasiri, X Qian, ER Dougherty Signal Processing 144, 311-322, 2018 | 15 | 2018 |
| A Bayesian robust Kalman smoothing framework for state-space models with uncertain noise statistics R Dehghannasiri, X Qian, ER Dougherty EURASIP Journal on Advances in Signal Processing 2018, 1-17, 2018 | 14 | 2018 |
| Optimal objective-based experimental design for uncertain dynamical gene networks with experimental error DN Mohsenizadeh*, R Dehghannasiri*, ER Dougherty IEEE/ACM transactions on computational biology and bioinformatics 15 (1 …, 2016 | 14 | 2016 |
| Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets J Zhao, G Wang, J Ming, Z Lin, Y Wang, TTM Consortium, AR Wu, C Yang Nature Computational Science 2 (5), 317-330, 2022 | 13 | 2022 |
| Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision M Vromman, J Anckaert, S Bortoluzzi, A Buratin, CY Chen, Q Chu, ... Nature methods 20 (8), 1159-1169, 2023 | 12 | 2023 |
| A novel de-interlacing method based on locally-adaptive nonlocal-means R Dehghannasiri, S Shirani 2012 Conference Record of the Forty Sixth Asilomar Conference on Signals …, 2012 | 11 | 2012 |
| Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung TTH Wu, KJ Travaglini, A Rustagi, D Xu, Y Zhang, L Andronov, SR Jang, ... Journal of Experimental Medicine 221 (6), e20232192, 2024 | 6* | 2024 |
Edward DoughertyProfessor of Electrical and Computer Engineering, Texas A&M UniversityVerified email at ece.tamu.edu
